RnoEX0045399 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140472284-140505698:+
Coord C1 exon
chr4:140472284-140472474
Coord A exon
chr4:140503164-140503344
Coord C2 exon
chr4:140505445-140505698
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCCTCTCCATGACAGCAC
3' ss Score
8.22
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGGGAGGTCCTGGGTCCGGCTCCACAAGCCGGGGTGAGATGAGCCTGGCTGAGGTTCAATGTCATCTCGACAAGGAAGGCGCCTCCAATCTGGTCATCGACCTCATAATGAATGCATCCAGCGACCGAGTATTCCACGAAAGCATTCTCCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACTATCCAG
Seq A exon
CACTCATTTTTCTGCCGGCTGACGGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTCTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACCGTGAACACCAGCGATTTGGGAAACAAAAAGAAAGATGATGAAGTGGACCGGGATGCCCCATCCCGGAAGAAAG
Seq C2 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCTTGGAAGCATCTGCTGCCACCAGAAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAATCTGGGGAGGGCACCCAGGCTACAACGGACAAAGCCAAGGATGACCTAGAGATGAGTGCAGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTCCTGTGTGAAAACCACAACCGCGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'68-74,'68-73,74-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.393 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCGACCGAGTATTCCA
R:
GTCATCCTTGGCTTTGTCCGT
Band lengths:
243-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]