BtaEX6093963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21693855-21724525:-
Coord C1 exon
chr22:21724335-21724525
Coord A exon
chr22:21696053-21696233
Coord C2 exon
chr22:21693855-21694108
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCATGGGTTTTCCTTGGCAGCAC
3' ss Score
6.85
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGGAGGTTCCGGATCCAGCCCCATGAGCAGGGGTGAAATGAGCCTGGCCGAGGTTCAGTGCCACCTTGACAAGGAGGGGGCCTCCAACCTGGTCATCGACCTCATCATGAACGCATCCAGTGACCGAGTGTTCCATGAAAGCATTCTTCTAGCCATCGCCCTGCTGGAAGGAGGCAACACCACCATACAG
Seq A exon
CACTCCTTTTTCTGCCGGTTGACAGAAGACAAGAAGTCAGAGAAATTCTTCAAGGTTTTCTATGACCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCAACAGTGACCGTGAACACCAGTGACTTGGGAAATAAAAAGAAAGATGACGAGGTGGACAGGGATGCCCCGTCACGGAAAAAAG
Seq C2 exon
CCAAAGAGCCTGCGACGCAGATTACGGAAGAGGTGCGGGATCAGCTCTTGGAGGCCTCTGCTGCCACCCGCAAAGCCTTCACCACCTTCAGAAGGGAAGCTGACCCCGACGACCACTACCAGTCCGGGGAGGGCGCCCAGGCCGCGGCGGACAAGAGCAAGGACGACCTGGAGATGAGCGCGGTCATCACCATCATGCAGCCCATCCTCCGCTTCCTGCAGCTGCTGTGCGAAAACCACAACCGGGACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'50-49,'50-47,51-49=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.393 C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGACCGAGTGTTCCATG
R:
CAGGTCGTCCTTGCTCTTGTC
Band lengths:
244-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]