DreEX6092764 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35582428-35616103:-
Coord C1 exon
chr11:35615895-35616103
Coord A exon
chr11:35582931-35583114
Coord C2 exon
chr11:35582428-35582678
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTACCTTCCTACAGCGG
3' ss Score
10.2
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCAGCAGGGAGTCGGGGAGAGCTGAGTCTGGCTGAAGTGCAGTGTCACCTGGACAGAGAAGGAGCTTCTGACCTGGTCATTGACCTCATCATGAATGCCACCAGTGACCGGATCTTCCAGGAAAGCATCTTGCTGGCCATCGCTCTGCTTGAGGGAGGAAACCCCGTCATACAG
Seq A exon
CGGTCGTTCTTCTGCCGCTTGACGGGTGATAATAAGTCAGAGAAGTTCTTTAAGGTGTTTTACGAGCGGATGAAACTCGCCCAGCAGGAGATCAAGGCCACAGTGACGGTGAACACCAGCGATCTAGGCAGCAAACGCAAAGATGAGGACACCAATGATAAGGATGTACAATCACGCAAGAAAG
Seq C2 exon
TCAAAGATGTGGCTGTTATAACCGAAGAAGTGCGAGAGCAGCTACTAGAAGCCTCTACGGTCACTAAGAAGGCCTTCAGCACTTACAGAAGAGAAGCGGACGCGGATGAGCATCTGAATGCTACGGAGGGACCAAGCAGCACAGCTGAGAAGAACCAGGACGAGAACGAGATGAGCGTCATCATCACCATCATGCAGCCAATCCTGCGCCTCATGCAGCTGCTCTGCGAAAACCACAACCGAGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'50-48,'50-47,51-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.323 C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(25.4=36.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGGACAGAGAAGGAGC
R:
ATTCAGATGCTCATCCGCGTC
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]