GgaEX0012011 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18480626-18500983:+
Coord C1 exon
chr12:18480626-18480816
Coord A exon
chr12:18495092-18495272
Coord C2 exon
chr12:18500783-18500983
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGTTCCACTTTCTCTCGTAGCAT
3' ss Score
8.74
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GAGGAAGCTCTGGATCGAGTTCAATGAGCAGAGGTGAGATGAGTTTGGCAGATGTTCAGTGTCATCTGGATAAAGAAGGTGCATCCAACCTGGTCATAGACCTCATCATGAATGCCACCAGCGACAGAGTCTTCCATGAGAGCATCCTACTCGCCATTGCCCTTCTGGAAGGAGGCAACACTACAATACAG
Seq A exon
CATTCGTTCTTCTGCCGACTAACAGAAGACAAGAAATCCGAAAAGTTCTTTAAGGTTTTTTACGATCGCATGAAAGTAGCACAGCAGGAAATCAAGGCTACTGTCACAGTCAACACGAGTGACTTAGGAAACAAAAAGAAAGATGAAGACTCAGACAGAGACGTTCCCAACAGAAAAAGAG
Seq C2 exon
AATTTCCTTCGCTGCCAGAACAACAAGACCAACTACAACTTGGTGTGTGAAACGCTGCAGTTCCTGGACTGCATCTGTGGAAGCACAACTGGTGGGCTTGGACTTCTTGGTCTGTATATCAATGAGAAAAACGTAGCGCTGATCAACCAGACGCTGGAAAGCTTGACTGAGTACTGCCAGGGGCCCTGCCACGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-22/24=21-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.410 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCGACAGAGTCTTCCAT
R:
CCTGGCAGTACTCAGTCAAGC
Band lengths:
256-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]