GgaEX0012011 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19124936-19140469:+
Coord C1 exon
chr12:19124936-19125126
Coord A exon
chr12:19139401-19139581
Coord C2 exon
chr12:19140216-19140469
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGTTCCACTTTCTCTCGTAGCAT
3' ss Score
8.74
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GAGGAAGCTCTGGATCGAGTTCAATGAGCAGAGGTGAGATGAGTTTGGCAGATGTTCAGTGTCATCTGGATAAAGAAGGTGCATCCAACCTGGTCATAGACCTCATCATGAATGCCACCAGCGACAGAGTCTTCCATGAGAGCATCCTACTCGCCATTGCCCTTCTGGAAGGAGGCAACACTACAATACAG
Seq A exon
CATTCGTTCTTCTGCCGACTAACAGAAGACAAGAAATCCGAAAAGTTCTTTAAGGTTTTTTACGATCGCATGAAAGTAGCACAGCAGGAAATCAAGGCTACTGTCACAGTCAACACGAGTGACTTAGGAAACAAAAAGAAAGATGAAGACTCAGACAGAGACGTTCCCAACAGAAAAAGAG
Seq C2 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'50-54,'50-53,52-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.410 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCGCCATTGCCCTTCTG
R:
GCGGAGGATGGGTTGCATTAT
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]