MmuEX0024733 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108440497-108473660:+
Coord C1 exon
chr6:108440497-108440687
Coord A exon
chr6:108471023-108471203
Coord C2 exon
chr6:108473407-108473660
Length
181 bp
Sequences
Splice sites
3' ss Seq
GAATCTCTTCTCCATGACAGCAC
3' ss Score
5.07
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGGGAGGTCCTGGATCTAGTTCCACAAGCAGGGGTGAGATGAGCCTGGCTGAGGTTCAGTGTCACCTCGACAAGGAGGGGGCCTCCAACCTGGTCATCGATCTCATAATGAATGCATCCAGTGACCGAGTATTCCATGAAAGCATTCTGCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACCATCCAG
Seq A exon
CACTCGTTTTTCTGCCGGCTGACAGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTTTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACAGTGAACACCAGCGACTTGGGAAACAAAAAGAAAGATGATGAAGTGGACAGGGATGCCCCGTCTCGGAAGAAAG
Seq C2 exon
CCAAAGAGCCCACAACACAGATAACAGAAGAGGTCCGGGATCAGCTCCTGGAAGCATCTGCTGCCACCAGGAAAGCCTTTACCACCTTCCGGAGGGAGGCCGACCCTGATGACCATTACCAGTCTGGGGAGGGCACCCAGGCTACAACCGACAAAGCCAAGGATGACCTAGAGATGAGCGCTGTCATCACCATCATGCAGCCTATCCTGCGCTTCCTGCAGCTGCTGTGTGAAAACCACAACCGAGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-44/59=43-45
Average complexity
S
Mappability confidence:
97%=98=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.391 C2=0.451
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuEX0024724
- MmuEX0024725
- MmuEX0024727
- MmuEX0024731
- MmuEX6005998
- MmuEX6005999
- MmuEX6006000
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTCCACAAGCAGGGGTGA
R:
GTAAAGGCTTTCCTGGTGGCA
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types