MmuEX6005999 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108438300-108471203:+
Coord C1 exon
chr6:108438300-108438432
Coord A exon
chr6:108440497-108440687
Coord C2 exon
chr6:108471023-108471203
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTAATATTCTGCCTTTCCAGGGG
3' ss Score
8.7
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGAGGCACTCCGACAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGCCCACTATCACCAGGAGGACCCAGCAAGCCTGGTGGAGGAG
Seq A exon
GGGGAGGTCCTGGATCTAGTTCCACAAGCAGGGGTGAGATGAGCCTGGCTGAGGTTCAGTGTCACCTCGACAAGGAGGGGGCCTCCAACCTGGTCATCGATCTCATAATGAATGCATCCAGTGACCGAGTATTCCATGAAAGCATTCTGCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACCATCCAG
Seq C2 exon
CACTCGTTTTTCTGCCGGCTGACAGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTTTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACAGTGAACACCAGCGACTTGGGAAACAAAAAGAAAGATGATGAAGTGGACAGGGATGCCCCGTCTCGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-43/59=42-44
Average complexity
S
Mappability confidence:
97%=96=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=0.324 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
- MmuEX0024724
- MmuEX0024725
- MmuEX0024727
- MmuEX0024731
- MmuEX0024733
- MmuEX6006000
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTCCGACAAATTTTGGT
R:
CAAGTCGCTGGTGTTCACTGT
Band lengths:
255-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types