RnoEX6014526 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140470174-140503344:+
Coord C1 exon
chr4:140470174-140470306
Coord A exon
chr4:140472284-140472474
Coord C2 exon
chr4:140503164-140503344
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTTATGTTCTGCCTTTCCAGGGG
3' ss Score
9.24
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGAGGCACTCCGGCAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGTCCACTATCACCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
Seq A exon
GGGGAGGTCCTGGGTCCGGCTCCACAAGCCGGGGTGAGATGAGCCTGGCTGAGGTTCAATGTCATCTCGACAAGGAAGGCGCCTCCAATCTGGTCATCGACCTCATAATGAATGCATCCAGCGACCGAGTATTCCACGAAAGCATTCTCCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACTATCCAG
Seq C2 exon
CACTCATTTTTCTGCCGGCTGACGGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTCTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACCGTGAACACCAGCGATTTGGGAAACAAAAAGAAAGATGATGAAGTGGACCGGGATGCCCCATCCCGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'65-73,'65-65,68-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.527 A=0.317 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCCGGCAAATTTTGGTC
R:
CTGGTGTTCACGGTCACTGTC
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]