BtaEX6093962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21696053-21726774:-
Coord C1 exon
chr22:21726642-21726774
Coord A exon
chr22:21724335-21724525
Coord C2 exon
chr22:21696053-21696233
Length
191 bp
Sequences
Splice sites
3' ss Seq
GCAATGTTGCGTCTTTCCAGGGG
3' ss Score
8.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGAGGCCCTCAGGCAGATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCGGGAAGAAGAGAGAGCCTCACGAGCTTTGGCAATGGCCCGCTGTCGCCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
Seq A exon
GGGGAGGTTCCGGATCCAGCCCCATGAGCAGGGGTGAAATGAGCCTGGCCGAGGTTCAGTGCCACCTTGACAAGGAGGGGGCCTCCAACCTGGTCATCGACCTCATCATGAACGCATCCAGTGACCGAGTGTTCCATGAAAGCATTCTTCTAGCCATCGCCCTGCTGGAAGGAGGCAACACCACCATACAG
Seq C2 exon
CACTCCTTTTTCTGCCGGTTGACAGAAGACAAGAAGTCAGAGAAATTCTTCAAGGTTTTCTATGACCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCAACAGTGACCGTGAACACCAGTGACTTGGGAAATAAAAAGAAAGATGACGAGGTGGACAGGGATGCCCCGTCACGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'49-47,'49-46,50-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.273 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGGCAGATTTTGGTCA
R:
TGGTGTTCACGGTCACTGTTG
Band lengths:
244-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]