MmuEX6005999 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108388294-108421197:+
Coord C1 exon
chr6:108388294-108388426
Coord A exon
chr6:108390491-108390681
Coord C2 exon
chr6:108421017-108421197
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTAATATTCTGCCTTTCCAGGGG
3' ss Score
8.7
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGAGGCACTCCGACAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGCCCACTATCACCAGGAGGACCCAGCAAGCCTGGTGGAGGAG
Seq A exon
GGGGAGGTCCTGGATCTAGTTCCACAAGCAGGGGTGAGATGAGCCTGGCTGAGGTTCAGTGTCACCTCGACAAGGAGGGGGCCTCCAACCTGGTCATCGATCTCATAATGAATGCATCCAGTGACCGAGTATTCCATGAAAGCATTCTGCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACCATCCAG
Seq C2 exon
CACTCGTTTTTCTGCCGGCTGACAGAAGATAAGAAATCAGAGAAGTTCTTCAAGGTTTTTTACGATCGAATGAAGGTGGCCCAGCAGGAAATCAAGGCGACAGTGACAGTGAACACCAGCGACTTGGGAAACAAAAAGAAAGATGATGAAGTGGACAGGGATGCCCCGTCTCGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'50-53,'50-50,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=0.312 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTCCGACAAATTTTGGT
R:
CAAGTCGCTGGTGTTCACTGT
Band lengths:
255-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: