DreEX6023168 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39974328-39976280:+
Coord C1 exon
chr6:39974328-39974454
Coord A exon
chr6:39974529-39974701
Coord C2 exon
chr6:39976097-39976280
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCGTTTGATTTCAGGGG
3' ss Score
7.99
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGGGAGGCCCTTCGGCAGCTGCTCGTCAATCGTTACTATGGCTTCAGGAGTGGTGGGCGGAGAGAAAGTCTGACCTCGTTTGGTAACTCCACCCTAACTCCTGTCGGGCCAATCAAGAGCCAGCCAG
Seq A exon
GGGGGTTGAGCAGGGCTGAGATGTCATTAATGGAGGTGCAGTGTCATCTAGACCGTGAAGGGGCATCGGATCTTGTCATTGATCTCATCATGAACACTACCAGCGACCGCGTCTTCCATGAAAGCATTCTGTTGGCCATCGCACTGTTGGAGGGCGGAAACACCATCATACAG
Seq C2 exon
CATTCCTTCTTCAAACGTTTAACAGAAGACAAAAATTCAGAGAAGTTTTTCAGGGTGTTTTATGACAGAATGAAAGTGGCTCAGGTGGAGATCAAAGCCACGGTTACTGTCAACACTAGTGACCTCGGCAACAAGCGGCGTGACGACAACACTCCAGACAAAGATACTCCACAACGCCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'43-51,'43-50,44-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.017 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTCGTCAATCGTTA
R:
TGCCGAGGTCACTAGTGTTGA
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]