GgaEX0027290 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18479067-18495272:+
Coord C1 exon
chr12:18479067-18479199
Coord A exon
chr12:18480626-18480816
Coord C2 exon
chr12:18495092-18495272
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGTCATCATCACCTTTATAGGAG
3' ss Score
7.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
Seq A exon
GAGGAAGCTCTGGATCGAGTTCAATGAGCAGAGGTGAGATGAGTTTGGCAGATGTTCAGTGTCATCTGGATAAAGAAGGTGCATCCAACCTGGTCATAGACCTCATCATGAATGCCACCAGCGACAGAGTCTTCCATGAGAGCATCCTACTCGCCATTGCCCTTCTGGAAGGAGGCAACACTACAATACAG
Seq C2 exon
CATTCGTTCTTCTGCCGACTAACAGAAGACAAGAAATCCGAAAAGTTCTTTAAGGTTTTTTACGATCGCATGAAAGTAGCACAGCAGGAAATCAAGGCTACTGTCACAGTCAACACGAGTGACTTAGGAAACAAAAAGAAAGATGAAGACTCAGACAGAGACGTTCCCAACAGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-21/24=20-22
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.170 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGCAAGTTTTGGTCAACC
R:
GTCACTCGTGTTGACTGTGACA
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]