GgaEX0027290 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19123377-19139581:+
Coord C1 exon
chr12:19123377-19123509
Coord A exon
chr12:19124936-19125126
Coord C2 exon
chr12:19139401-19139581
Length
191 bp
Sequences
Splice sites
3' ss Seq
TGTCATCATCACCTTTATAGGAG
3' ss Score
7.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
Seq A exon
GAGGAAGCTCTGGATCGAGTTCAATGAGCAGAGGTGAGATGAGTTTGGCAGATGTTCAGTGTCATCTGGATAAAGAAGGTGCATCCAACCTGGTCATAGACCTCATCATGAATGCCACCAGCGACAGAGTCTTCCATGAGAGCATCCTACTCGCCATTGCCCTTCTGGAAGGAGGCAACACTACAATACAG
Seq C2 exon
CATTCGTTCTTCTGCCGACTAACAGAAGACAAGAAATCCGAAAAGTTCTTTAAGGTTTTTTACGATCGCATGAAAGTAGCACAGCAGGAAATCAAGGCTACTGTCACAGTCAACACGAGTGACTTAGGAAACAAAAAGAAAGATGAAGACTCAGACAGAGACGTTCCCAACAGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-17/17=16-C2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.250 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGCAAGTTTTGGTCAACC
R:
GTCACTCGTGTTGACTGTGACA
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]