MmuEX6006018 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108381188-108542064:+
Coord C1 exon
chr6:108381188-108381360
Coord A exon
chr6:108382105-108382224
Coord C2 exon
chr6:108541903-108542064
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTGCTTTCTGCTTAGGTT
3' ss Score
9.48
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGTACATAGCCAAGCAGTTTGGCTTCATGCAGAAGCAGATTGGCTATGACGTGCTGGCCGAAGACACCATCACTGCCCTGCTCCACAACAACCGGAAACTCCTGGAGAAGCACATCACCGCGGCAGAGATTGACACGTTTGTCAGCCTGGTGCGAAAGAACAGGGAGCCCAG
Seq A exon
GTTCTTGGATTACCTCTCTGACCTCTGCGTATCCATGAACAAGTCAATCCCTGTGACACAGGAGCTCATCTGTAAAGCTGTGCTCAATCCCACCAATGCTGACATCCTGATTGAGACCAA
Seq C2 exon
GAAAGAAACCTTGATTGGTTCCCCAGAATGAGAGCCATGTCCCTGGTCAGCAGCGATTCTGAAGGGGAACAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCTACCATGAAGCTGGTCACCAATCTTTCTGGCCAGCTGTCAGAACTAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-17/59=16-C2
Average complexity
C3
Mappability confidence:
93%=94=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.359
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(27.7=100)
A:
PF0136516=RYDR_ITPR=FE(19.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuALTA0009413-1/2
- MmuALTA0009413-2/2
- MmuALTD0007226-1/2
- MmuALTD0007226-2/2
- MmuEX0024723
- MmuEX0024724
- MmuEX0024725
- MmuEX0024726
- MmuEX0024727
- MmuEX0024728
- MmuEX0024730
- MmuEX0024731
- MmuEX0024733
- MmuEX0024734
- MmuEX0024735
- MmuEX0024736
- MmuEX6005985
- MmuEX6005986
- MmuEX6005987
- MmuEX6005988
- MmuEX6005989
- MmuEX6005990
- MmuEX6005991
- MmuEX6005992
- MmuEX6005993
- MmuEX6005994
- MmuEX6005995
- MmuEX6005998
- MmuEX6005999
- MmuEX6006000
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006004
- MmuEX6006005
- MmuEX6006006
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
- MmuINT0084431
- MmuINT0084468
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACCATCACTGCCCTG
R:
AGCTGGCCAGAAAGATTGGTG
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types