Special

MmuALTD0007226-2/2 @ mm10

Alternative 5'ss

Gene
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108388276-108389554:+
Coord C1 exon
chr6:108388276-108388338
Coord A exon
chr6:108388339-108388365
Coord C2 exon
chr6:108389367-108389554
Length
27 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
Exon sequences
Seq C1 exon
ACTGTGTCCATGTGACCACTATCTTCCCCATTAGCAAGATGACAAAAGGAGAAGAGAATAAAG
Seq A exon
GTAACAATGATGAGGAGAAGCTGAAGA
Seq C2 exon
GCAGTAACGTGATGAGGTCTATCCATGGCGTTGGGGAGCTGATGACCCAGGTGGTGCTGCGGGGAGGAGGCTTCTTGCCCATGACTCCCATGGCTGCGGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGACATCATGGTCATGGACACCAAGTTGAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-54-47,55-47-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.031 A=NA C2=0.190
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTCCATGTGACCACTA
R:
CTGGGTCATCAGCTCCCCAA
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types