RnoALTD0014877-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140421413-140422751:+
Coord C1 exon
chr4:140421413-140421566
Coord A exon
chr4:140421567-140421593
Coord C2 exon
chr4:140422564-140422751
Length
27 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTTGTGAACTTAGCCAGGAACCTCATATACTTTGGCTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTTCATGTGACAACCATCTTCCCCATTAGCAAGATGACGAAAGGCGAAGAGAATAAAG
Seq A exon
GTAACAATGCTGAGGAGAAGCTGAAGA
Seq C2 exon
GCAGCAACGTGATGAGATCTATCCATGGAGTTGGGGAGCTCATGACCCAGGTGGTGCTTCGGGGAGGAGGCTTTTTGCCCATGACTCCTATGGCTGCTGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGATATCATGGTCATGGACACCAAGTTAAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-39-36,40-36-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATTAGCAAGATGACGA
R:
CAAAAAGCCTCCTCCCCGAAG
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]