RnoINT0076636 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140421413-140422751:+
Coord C1 exon
chr4:140421413-140421566
Coord A exon
chr4:140421567-140422563
Coord C2 exon
chr4:140422564-140422751
Length
997 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTTGTGAACTTAGCCAGGAACCTCATATACTTTGGCTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTTCATGTGACAACCATCTTCCCCATTAGCAAGATGACGAAAGGCGAAGAGAATAAAG
Seq A exon
GTAACAATGCTGAGGAGAAGCTGAAGAGTGAGTATCTGAAGTGTCTGTGCTGACAGATGCCCTCCCAGCCCGTGCTGTCTCACTCATGCCATGCCTTATCATGTGACAGCCTGTCCTGTCCTTGTCCGTTCTCACCACTGGGAGCACACCAATAGAAGTAAAGTCGGGAAGAGTTCCATTAAGTCCAGCACCCACCACTGCTGGTCGCTCTCGGCAGTTCACTCTGCCCTTGCATCTGTCTAGACTCCTTCCCTGCGTCTTACTGGATAGTTTGAAAGTTTCCTTGTGCTTTCACTGTTGGACCCTCCAAGCCCATGCTCTGCCATCTGTTCTCCATGCGTCTGAGACACTTGAGGACGATACTCCTGTATGACGAACTGAAGTGCAAGCTTGTGTCTTGATATTCCTTCTCACTTGTGAATAGGGAAATCCTTGTTTAAATGTTTGTTTCTTGCTATATTCGGGGGTTAGAATAGGCATAGAATGACCATGGTGTGTTTTCTACAGCTAGGATGGAGAAGGCATTTGATTTGATTCTATTTGCCAAGTACTACGTGATGTCATTTTGTATGCGTCACACCCTTGAGTTCTGTCACAGAGCTCTTTTTCTATGTGAGGACAACGAGACTCGGAGGTGATGCAAGGCCTTCAAGGCCAAGTGGCTTTTGTTCCAAGCAGCAGTATCTGCGCCCTGCTAGCTTACATTCCTAGTCTGGGTACAATCACAAGAGCTCGTCATTGGTGCCAAGTCATACTTGGTGATAAAATTAGTAAAGAAACAACACCCCACTGGAGATGTCAAAACCATGGTGTTCCACTAATCTCAGAAGTCTTAAATTTGTAATGTTTATTAACCTGTTTGGGTTCCTTGGGTCGACAGAATTATCTCAACAGGGTTGTGTTAAATAGTCTACCTTAAAAAGCCCATACCCCTAATCAGATTCTTCGGGCTCTCTCCAGAGATGTCATGACCATGGTCTGACTTGGCCTTTTCTAG
Seq C2 exon
GCAGCAACGTGATGAGATCTATCCATGGAGTTGGGGAGCTCATGACCCAGGTGGTGCTTCGGGGAGGAGGCTTTTTGCCCATGACTCCTATGGCTGCTGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGATATCATGGTCATGGACACCAAGTTAAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGAACTTAGCCAGGAACCT
R:
TTTCAATGATCTTTAACTTGGTGTCC
Band lengths:
334-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]