GgaINT0021960 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18444723-18445376:+
Coord C1 exon
chr12:18444723-18444876
Coord A exon
chr12:18444877-18445188
Coord C2 exon
chr12:18445189-18445376
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTTTACCTACCTCTGTGAAGGGA
3' ss Score
4.52
Exon sequences
Seq C1 exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
Seq A exon
GTAAGACTGAGAAGAGATTGCTCACCAGCAGGTTTGAGTTGGTGTAAAAATATTAGTTTGGTTTCAAAACCTTCTACTCAGTGCTGTCTGTGGCTTGGTTGCAAAGCAGGGTGACGTCTACAATGGAAGAGGGAGCAAGCAAGGGGGTTCAGAAGCATTGCTCCCGTTGGCTTTCACCTGTTCCAGGGAGTTAGGTGTTTGGCTGCCTTTAATGTTGAGACAAGTTCTCTTTGTAGGATGTGGAATGTCCTTAGCCTGTTAATGCAGTCCCATTACACCAACGTAATTACATGTTTACCTACCTCTGTGAAG
Seq C2 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTAACTTAGCCAGAAATCTGA
R:
CTGAAGTATTTCAATGATCTTCAGCT
Band lengths:
342-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]