MmuINT0084431 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108338179-108339548:+
Coord C1 exon
chr6:108338179-108338332
Coord A exon
chr6:108338333-108339360
Coord C2 exon
chr6:108339361-108339548
Length
1028 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTTGTGAACTTAGCCAGGAATCTCATATACTTTGGTTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTCCATGTGACCACTATCTTCCCCATTAGCAAGATGACAAAAGGAGAAGAGAATAAAG
Seq A exon
GTAACAATGATGAGGAGAAGCTGAAGAGTGAGTATCTGAAGTGTCTGTCTGTGCTGACAGATGTCCCCCAGCCCATGCTGCCTCATTCATGCCATGCCTTATCATGTGACATGCTGTCCTGTCCTCGTCCGTTCTCACCATTGGGAGCATACCAATAGACGTAAAGTCTCGAAGAGTTCCGCTAAGACCAGTGCCCAGCACTGATGGTCGTTCTCAGCAATTTACTCTTCCCTTTGCCTCTGTCTAGAGTCCTTCTTTGTGTCTTACTGAAGAGTGTGAAGGTTGTCTTGTGCTTTGACCATTTGCCCCTCCAAAGCTCATGCTCTGCCATCTGTGTTCCATGCTTCTGAGACACTTGAGGATGATACTCCTATATGATGAACTAAAGTGCAAGCTTATATCTTGATATTCCTTTTCGCTTGTGAATAGGAAAATCCTTGTTTATATGTTTATTTCAAGCTGTATTAGGGGGGTCAGAATAGGCATAGGATAATCATGATGTGTCATATGCTTAGCTGGTTTTCTGTAAGTAGGATGAAAAAGGCATTTGACTTGGTTCTCCCTATTTGCCAAGTACGGTGTGATACCATTTTGCATGCATTATGTATACCATGGAGTTCTGATATAGAGCTCTTTTCTGTGTGAGGACACCGAGACTCAGAGGTGACATAATGCATTCAAAACCAAGCAGCTCTGGTTAGAAGCAGCACTATTCGTGTCCTGCTAACTTCCATTCCTATTCTGTGCACCATCACAAGCACATGTCGTTGGTGCTGAGTCAAATTTGGTGATGAAATCAGTAAAGCAGCAACACCCCACTGGAGATGTCAAGACCAGGATGTTCTGCTAATCTCAGACGTCTTAAATTTGCCATGCTTGTTAACCTTTCTGGGTTCCTTGGGTCAAGAGAATGTATCTTAACAGGGATGTGTTAAATAGTTTGCCTAAAAAAAGCCCATACCCCTAATCAGAGCCTTCAGGCTTTCTCCAAAGATGTCATGACCGTGGTCTGACTTGGCCTTTTCTAG
Seq C2 exon
GCAGTAACGTGATGAGGTCTATCCATGGCGTTGGGGAGCTGATGACCCAGGTGGTGCTGCGGGGAGGAGGCTTCTTGCCCATGACTCCCATGGCTGCGGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGACATCATGGTCATGGACACCAAGTTGAAGATCATTGAAATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGAACTTAGCCAGGAATCTCA
R:
CTGGAGTATTTCAATGATCTTCAACT
Band lengths:
342-1370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: