HsaINT0083176 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4716752-4718485:+
Coord C1 exon
chr3:4716752-4716932
Coord A exon
chr3:4716933-4718297
Coord C2 exon
chr3:4718298-4718485
Length
1365 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCTCTCCTGGCCTTTCCTAGGCA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTTGTAAATTTAGCTAGGAATCTCATATACTTTGGTTTCTACAACTTCTCTGACCTTCTACGATTAACTAAGATCCTTCTGGCCATATTGGACTGTGTACATGTGACAACAATCTTCCCCATTAGCAAGATGGCGAAAGGAGAAGAGAATAAAGGTAACAATGATGTGGAGAAGCTGAAGA
Seq A exon
GTGAGTATCTGAGGGTGCCCATACATCTGAGAGATGCCCTCCAGCCTTTCCTGTTATGCTCATGTCATACCCTATATGTGATGCCACATCCTTTCTTTGTTCATTCCTTCCCAACTTTTCATCGTGAACATTTTCAAATACTGTGTAAAGAAAAGCGGAAAGAACAGTACGATGGAGTCCCACGTACCCATGACTTTGAGTCAACAGTTATTCACGTTTTGCTGAATTTTATTTTGTATTTATGTGTATTTATGTGTATTTTATTTTGTATTTATGTGTTTATGTATGAGTCGTGTGTATATTTTGTTGAACAATTTGAAAGTTACTTAACACTTTGAATGTTTATATAACAAATACATGTCCTATCATTGTTCTTGACATTCGTGAGACCCTTGATAATAATATTTGTTTAGGATGTAAGAAAATCCAGGCTTCTATCTTGGTGGCTATTTCCACTTTGTGAGAAGGACAATCTGCCTTTGCATGTTTATTTCTTCCTCGTTTTAGGGTCAGAGTAGGCAGATATTGGTATCATGTATCAATTATTGTTAACTGGTCTTCTGCAGCTAGAACAGAAAGAAATACATTGACTTATCTCTATTTGCTAGGTCTTGTGCTGAGTCATGTTGCATTATACCATTTAGTTCTTTTGTTGAGCTCCTTTATTTCCATTTTGTAGATGAGGAGACTGAGGCTTAGAGGTAGTATGGTGCACCTAAGGTCAAGCAGCATCAGGATTTGTACCTTGTTAACTTTATGTACCTAGTTCTGTGCTCATAACAAGCACATAGTTGATGATCAATAAAATTTGGGCAGGGCATAGTGATTCATACCTGTAATACTAACATTTTGGGAGGCTGTAGCAGGAGGATTGCTTGAGGCCAGGAGTTCGAGACCAGGCTGGGCAATATAGAGAGAACCTATCTCTACCAAAAAAAAAAAAAAAATTAGCTGGGTGTGGTGATGCATGCCTATAGTCCTAGCTACTTGAGACGTTGAGGCAGGAAGATTGTTTGAGCCCAGAAGTTTGAGGCCACAGGGAACCATCATTGTGTCACTGCACTCCAGCCTAGGTGATAGAGGAAGATCCTGTCTCTAAAGAAAATTAAAAAAAATAAAATTTGATGGGCAAGTTAGTGCACAGAAATGCCCCTCTGGGGATTTTGAAGCCCGTGATCTTTCTGTTGCTCTCAGAAGCCCAGATTTTTGATGTGCATTTACCTTTCCAGGTTTCCAGGGTCCTGAGATTATGTTGGAATAGGGATATGTTAAATAATTTCTCTCAAAGAGCCCCTGCCCCTTGACATATGCCTCTGAGCATTCTCTAGAGACATTGTGACCGTGGTCTCTCCTGGCCTTTCCTAG
Seq C2 exon
GCAGTAACGTGATGAGATCTATTCATGGCGTGGGAGAGCTGATGACCCAGGTGGTGCTCCGGGGAGGAGGCTTTTTGCCCATGACTCCCATGGCTGCTGCCCCTGAAGGCAATGTGAAGCAGGCAGAGCCTGAGAAGGAGGACATCATGGTCATGGACACCAAGCTGAAGATCATTGAGATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_001168272:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAGGAATCTCATATACTTTGGT
R:
TGATCTTCAGCTTGGTGTCCA
Band lengths:
344-1709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)