GgaINT0021960 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19088359-19089012:+
Coord C1 exon
chr12:19088359-19088512
Coord A exon
chr12:19088513-19088824
Coord C2 exon
chr12:19088825-19089012
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTTTACCTACCTCTGTGAAGGGA
3' ss Score
4.52
Exon sequences
Seq C1 exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
Seq A exon
GTAAGACTGAGAAGAGATTGCTCACCAGCAGGTTTGAGTTGGTGTAAAAATATTAGTTTGGTTTCAAAACCTTCTACTCAGTGCTGTCTGTGGCTTGGTTGCAAAGCAGGGTGACGTCTACAATGGAAGAGGGAGCAAGCAAGGGGGTTCAGAAGCATTGCTCCCGTTGGCTTTCACCTGTTCCAGGGAGTTAGGTGTTTGGCTGCCTTTAATGTTGAGACAAGTTCTCTTTGTAGGATGTGGAATGTCCTTAGCCTGTTAATGCAGTCCCATTACACCAACGTAATTACATGTTTACCTACCTCTGTGAAG
Seq C2 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTAACTTAGCCAGAAATCTGA
R:
CTGAAGTATTTCAATGATCTTCAGCT
Band lengths:
342-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]