HsaINT1016915 @ hg38
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor type 1 [Source:HGNC Symbol;Acc:HGNC:6180]
Coordinates
chr3:4675068-4676801:+
Coord C1 exon
chr3:4675068-4675221
Coord A exon
chr3:4675222-4676613
Coord C2 exon
chr3:4676614-4676801
Length
1392 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTCTCCTGGCCTTTCCTAGGCA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTTGTAAATTTAGCTAGGAATCTCATATACTTTGGTTTCTACAACTTCTCTGACCTTCTACGATTAACTAAGATCCTTCTGGCCATATTGGACTGTGTACATGTGACAACAATCTTCCCCATTAGCAAGATGGCGAAAGGAGAAGAGAATAAAG
Seq A exon
GTAACAATGATGTGGAGAAGCTGAAGAGTGAGTATCTGAGGGTGCCCATACATCTGAGAGATGCCCTCCAGCCTTTCCTGTTATGCTCATGTCATACCCTATATGTGATGCCACATCCTTTCTTTGTTCATTCCTTCCCAACTTTTCATCGTGAACATTTTCAAATACTGTGTAAAGAAAAGCGGAAAGAACAGTACGATGGAGTCCCACGTACCCATGACTTTGAGTCAACAGTTATTCACGTTTTGCTGAATTTTATTTTGTATTTATGTGTATTTATGTGTATTTTATTTTGTATTTATGTGTTTATGTATGAGTCGTGTGTATATTTTGTTGAACAATTTGAAAGTTACTTAACACTTTGAATGTTTATATAACAAATACATGTCCTATCATTGTTCTTGACATTCGTGAGACCCTTGATAATAATATTTGTTTAGGATGTAAGAAAATCCAGGCTTCTATCTTGGTGGCTATTTCCACTTTGTGAGAAGGACAATCTGCCTTTGCATGTTTATTTCTTCCTCGTTTTAGGGTCAGAGTAGGCAGATATTGGTATCATGTATCAATTATTGTTAACTGGTCTTCTGCAGCTAGAACAGAAAGAAATACATTGACTTATCTCTATTTGCTAGGTCTTGTGCTGAGTCATGTTGCATTATACCATTTAGTTCTTTTGTTGAGCTCCTTTATTTCCATTTTGTAGATGAGGAGACTGAGGCTTAGAGGTAGTATGGTGCACCTAAGGTCAAGCAGCATCAGGATTTGTACCTTGTTAACTTTATGTACCTAGTTCTGTGCTCATAACAAGCACATAGTTGATGATCAATAAAATTTGGGCAGGGCATAGTGATTCATACCTGTAATACTAACATTTTGGGAGGCTGTAGCAGGAGGATTGCTTGAGGCCAGGAGTTCGAGACCAGGCTGGGCAATATAGAGAGAACCTATCTCTACCAAAAAAAAAAAAAAAATTAGCTGGGTGTGGTGATGCATGCCTATAGTCCTAGCTACTTGAGACGTTGAGGCAGGAAGATTGTTTGAGCCCAGAAGTTTGAGGCCACAGGGAACCATCATTGTGTCACTGCACTCCAGCCTAGGTGATAGAGGAAGATCCTGTCTCTAAAGAAAATTAAAAAAAATAAAATTTGATGGGCAAGTTAGTGCACAGAAATGCCCCTCTGGGGATTTTGAAGCCCGTGATCTTTCTGTTGCTCTCAGAAGCCCAGATTTTTGATGTGCATTTACCTTTCCAGGTTTCCAGGGTCCTGAGATTATGTTGGAATAGGGATATGTTAAATAATTTCTCTCAAAGAGCCCCTGCCCCTTGACATATGCCTCTGAGCATTCTCTAGAGACATTGTGACCGTGGTCTCTCCTGGCCTTTCCTAG
Seq C2 exon
GCAGTAACGTGATGAGATCTATTCATGGCGTGGGAGAGCTGATGACCCAGGTGGTGCTCCGGGGAGGAGGCTTTTTGCCCATGACTCCCATGGCTGCTGCCCCTGAAGGCAATGTGAAGCAGGCAGAGCCTGAGAAGGAGGACATCATGGTCATGGACACCAAGCTGAAGATCATTGAGATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995:ENST00000357086:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAGGAATCTCATATACTTTGGT
R:
TGGAGTATCTCAATGATCTTCAGCT
Band lengths:
330-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains