MmuEX6006005 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108401313-108406218:+
Coord C1 exon
chr6:108401313-108401513
Coord A exon
chr6:108403272-108403523
Coord C2 exon
chr6:108406090-108406218
Length
252 bp
Sequences
Splice sites
3' ss Seq
GAACACTTTTCTCTGTGTAGCTT
3' ss Score
7.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCCTGGAGGCAGTGACGATGCAGCACATCTTCATGAACAACTTCCAGCTGTGCAGTGAGATCAACGAGAGAGTGGTCCAGCACTTTGTTCACTGCATAGAGACCCACGGTCGAAACGTCCAGTATATCAAGTTTCTCCAGACGATTGTCAAGGCAGAAGGGAAATTCATTAAAAAGTGCCAAGACATGGTCATGGCTGAG
Seq A exon
CTTGTCAACTCTGGAGAGGACGTCCTCGTGTTCTACAATGACAGAGCCTCTTTCCAGACTCTGATCCAGATGATGCGGTCCGAGCGTGACCGGATGGATGAGAACAGCCCTCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCCGTGTGCACAGAGGGCAAGAATGTGTACACGGAGATCAAGTGCAACTCCTTGCTCCCGCTCGATGACATCGTTCGTGTGGTCACTCATGAAGACTGCATCCCCGAG
Seq C2 exon
GCCTGTAACAACACAAGCGACAGGAAGCACGCAGACTCCATTCTGGAGAAGTACGTCACTGAAATCGTGATGAGCATCGTCACCACCTTCTTCAGCTCTCCCTTCTCAGACCAGAGCACCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-31/59=30-33
Average complexity
C3
Mappability confidence:
96%=94=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(36.7=100)
A:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuEX0024723
- MmuEX0024724
- MmuEX0024731
- MmuEX6006003
- MmuEX6006004
- MmuEX6006006
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGAGGCAGTGACGATG
R:
GAGCTGAAGAAGGTGGTGACG
Band lengths:
299-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types