GgaEX1030872 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19096919-19099513:+
Coord C1 exon
chr12:19096919-19097119
Coord A exon
chr12:19098594-19098845
Coord C2 exon
chr12:19099388-19099513
Length
252 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTCTTTCTTGTTAGCTG
3' ss Score
7.64
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATTCTGGAAGCAGTAACAATGCAGCACATTTTCATGAACAACTTCCAGCTTTGCAGTGAGATTAATGAACGCGTTGTTCAACACTTTGTCCACTGTATAGAAACACATGGCAGAAATGTTCAGTACATAAAGTTCCTGCAGACAATTGTCAAGGCGGAAGGAAAATTCATTAAGAAATGCCAAGATATGGTAATGGCTGAG
Seq A exon
CTGGTGAATGCGGGAGAAGACGTCCTGGTGTTTTACAATGACAGAGCCTCCTTCCAGACTTTGGTGCAGATGATGAGATCAGAGAGGGATCGGATGGATGAGAACAGCCCGCTGATGTACCACATCCACTTGGTAGAACTGCTTGCTGTGTGCACAGAAGGCAAGAATGTCTACACAGAAATAAAATGCAACTCCCTCCTTCCTCTGGATGACATTGTTAGAGTAGTAACCCATGAGGATTGCATACCTGAG
Seq C2 exon
GTTAAAATTGCGTACATCAACTTCTTGAATCATTGCTATGTGGACACAGAAGTAGAAATGAAAGAGATTTACACCAGTAATCATATGTGGAAGCTATTTGAGAACTTCCTGGTTGACATCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'34-37,'34-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(36.7=100)
A:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACTTCCAGCTTTGCAGTG
R:
CCGACAGATGTCAACCAGGAA
Band lengths:
292-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]