MmuEX6006005 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108351307-108355519:+
Coord C1 exon
chr6:108351307-108351507
Coord A exon
chr6:108353266-108353517
Coord C2 exon
chr6:108355394-108355519
Length
252 bp
Sequences
Splice sites
3' ss Seq
GAACACTTTTCTCTGTGTAGCTT
3' ss Score
7.02
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCCTGGAGGCAGTGACGATGCAGCACATCTTCATGAACAACTTCCAGCTGTGCAGTGAGATCAACGAGAGAGTGGTCCAGCACTTTGTTCACTGCATAGAGACCCACGGTCGAAACGTCCAGTATATCAAGTTTCTCCAGACGATTGTCAAGGCAGAAGGGAAATTCATTAAAAAGTGCCAAGACATGGTCATGGCTGAG
Seq A exon
CTTGTCAACTCTGGAGAGGACGTCCTCGTGTTCTACAATGACAGAGCCTCTTTCCAGACTCTGATCCAGATGATGCGGTCCGAGCGTGACCGGATGGATGAGAACAGCCCTCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCCGTGTGCACAGAGGGCAAGAATGTGTACACGGAGATCAAGTGCAACTCCTTGCTCCCGCTCGATGACATCGTTCGTGTGGTCACTCATGAAGACTGCATCCCCGAG
Seq C2 exon
GTTAAGATCGCTTACATTAACTTCCTGAATCACTGCTATGTGGATACGGAGGTGGAGATGAAGGAGATTTACACAAGCAACCACATGTGGAAGTTGTTTGAGAATTTCCTCGTGGACATCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(36.7=100)
A:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAACTTCCAGCTGTGCA
R:
CCTGCAGATGTCCACGAGGA
Band lengths:
293-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: