Special

BtaEX6093955 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21766259-21770144:-
Coord C1 exon
chr22:21769944-21770144
Coord A exon
chr22:21768189-21768440
Coord C2 exon
chr22:21766259-21766384
Length
252 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTCACTGATCACAGCTG
3' ss Score
5.76
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATCCTGGAAGCCGTCACGATGCAGCACATCTTCATGAACAACTTCCAACTGTGCAGCGAGATCAACGAGCGGGTCGTCCAGCACTTTGTTCACTGCATCGAGACTCACGGTCGAAATGTCCAGTACATCAAGTTCCTGCAGACGATTGTCAAGGCTGAAGGGAAATTCATCAAGAAGTGCCAAGACATGGTCATGGCCGAG
Seq A exon
CTGGTTAATTCAGGAGAGGATGTCCTCGTGTTCTACAACGACAGAGCCTCTTTCCAGACCCTGATTCAGATGATGAGGTCCGAGCGGGACCGGATGGACGAGAACAGCCCCCTCATGTACCACATCCATCTGGTGGAGCTCTTGGCCGTGTGCACAGAGGGCAAGAACGTCTACACGGAGATCAAATGCAACTCCCTGCTCCCGCTGGATGACATTGTCCGCGTGGTGACCCACGAGGACTGCATCCCCGAG
Seq C2 exon
GTTAAAATTGCCTACATTAACTTCCTGAATCACTGCTATGTGGACACGGAAGTGGAAATGAAGGAGATTTATACCAGCAATCACATGTGGAAATTGTTTGAGAATTTCCTCGTCGACATCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'34-32,'34-31,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(36.7=100)
A:
PF0136516=RYDR_ITPR=PD(11.1=23.8)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACTTCCAACTGTGCAGC
R:
CCTGCAGATGTCGACGAGGAA
Band lengths:
292-544
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]