GgaEX0012002 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18438483-18440209:+
Coord C1 exon
chr12:18438483-18438655
Coord A exon
chr12:18438913-18439032
Coord C2 exon
chr12:18440015-18440209
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGCTTACGTTTTCCAACAGGTT
3' ss Score
9.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAATACATTGCAAAGCAATTTGGCTTCATGCAGAAACAAATTGGCTATGATGTCTTGGCTGAGGACACTATTACAGCACTGCTTCACAACAATCGCAAGCTCCTGGAGAAACACATCACGGCTGCTGAGATTGATACCTTTGTTAGTCTTGTGAGGAAGAATAGGGAGCCCAG
Seq A exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
Seq C2 exon
GCTGGTCCTCTCTCGATTTGAATTTGAAGAAGTGTCAAGTGGAGAAAATGCCTTGGAAGTTGGAGAAGATGAGGAAGAAGTGTGGCTATTCTGGAGAGACAGTAACAAGGAAATCCGCAGTAAGAGTATCAGAGAGTTGGCTCAGGATGCTAAGGAAGGGCAGAAGGAAGATCGGGACGTACTCAGCTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'21-27,'21-26,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(27.7=100)
A:
PF0136516=RYDR_ITPR=FE(19.4=100)
C2:
PF0136516=RYDR_ITPR=PD(3.9=12.1)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATCGCAAGCTCCTGGAG
R:
TGCCCTTCCTTAGCATCCTGA
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]