BtaEX6093944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21793471-21796432:-
Coord C1 exon
chr22:21796260-21796432
Coord A exon
chr22:21794871-21794990
Coord C2 exon
chr22:21793471-21793665
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCTGTTTCCCCACAGATT
3' ss Score
12.77
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGTACATAGCCAAGCAGTTCGGCTTCATGCAGAAGCAGATTGGCTATGACGTGCTGGCCGAAGACACTATCACCGCCCTTCTGCACAATAATCGCAAACTCCTGGAAAAACACATCACCGCGGCAGAGATTGACACCTTCGTCAGCCTGGTGCGGAAGAACAGGGAGCCCAG
Seq A exon
ATTCTTAGATTACCTCTCTGACCTCTGCGTGTCCATGAACAAATCCATTCCGGTGACTCAGGAACTGATATGTAAAGCCGTGCTGAATCCAACCAATGCCGACATCCTCATTGAGACCAA
Seq C2 exon
GTTGGTGCTCTCCCGTTTTGAATTTGAAGGCGTTTCTACCGGAGAGAACGCTCTGGAGGCAGGCGAGGATGAGGAAGAAGTATGGCTCTTCTGGAGGGACAGCAACAAGGAGGTTCGCAGTAAGAGTGTCCGGGAGCTGGCGCAGGATGCCAAGGAGGGCCAGAAGGAAGACCGCGACGTCCTTGGCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(27.7=100)
A:
PF0136516=RYDR_ITPR=FE(19.4=100)
C2:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCGAAGACACTATCAC
R:
CGGACACTCTTACTGCGAACC
Band lengths:
252-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]