DreEX6092746 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35676466-35678528:-
Coord C1 exon
chr11:35678356-35678528
Coord A exon
chr11:35678105-35678224
Coord C2 exon
chr11:35676466-35676651
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTGTTTGTGTTCAGGTT
3' ss Score
9.78
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GAATACATTGCCAAGCAGTTCCGCTTCATGCAGAAACAGATCGGCTACGATGTGTTGGCCGAGGACACAATAACAGCCCTCCTCCACAACAACCGCAAACTCTTGGAGAAGCACATCACGGCGGCAGAAATCGACACGTTTGTCAGCCTTGTGAGGAAAAACCGTGAACCGAG
Seq A exon
GTTTCTGGACTACCTCTCAGATCTGTGTGTGTCTATGAATAAGTCCATCCCAGTGACTCAGGAACTGATCTGCAATGCCGTTTTAAACCCCGCCAACGCTGACATCCTTATAGAGACCAA
Seq C2 exon
GCTGGTGTTGTCCCGGTTCGAGGTGGAGTCTGGAGAGGGTCCTATGGAGTCAGAAATAGACGAGGAGGAGGTCTGGTTGTTTTGGAAGAACAGCAATAAAGAGGTGAAGAGTAAGAGCATCAGAGAGTTGGCACAAGATGCCAAAGAAGGCCAGAAAGACGACCAGGATGTCATTAGTTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(27.7=100)
A:
PF0136516=RYDR_ITPR=FE(19.4=100)
C2:
PF0136516=RYDR_ITPR=PD(3.9=12.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAAACTCTTGGAGAAGCA
R:
CATCCTGGTCGTCTTTCTGGC
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]