Special

GgaEX0012002 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19082119-19083845:+
Coord C1 exon
chr12:19082119-19082291
Coord A exon
chr12:19082549-19082668
Coord C2 exon
chr12:19083651-19083845
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGCTTACGTTTTCCAACAGGTT
3' ss Score
9.28
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAATACATTGCAAAGCAATTTGGCTTCATGCAGAAACAAATTGGCTATGATGTCTTGGCTGAGGACACTATTACAGCACTGCTTCACAACAATCGCAAGCTCCTGGAGAAACACATCACGGCTGCTGAGATTGATACCTTTGTTAGTCTTGTGAGGAAGAATAGGGAGCCCAG
Seq A exon
GTTTTTGGATTATCTCTCAGATCTGTGCGTTTCCATGAACAAGTCTATTCCAGTAACACAGGAGTTGATTTGTAAAGCCGTACTGAATCCAGCAAATGCAGACATACTCATTGAAACGAA
Seq C2 exon
GCTGGTCCTCTCTCGATTTGAATTTGAAGAAGTGTCAAGTGGAGAAAATGCCTTGGAAGTTGGAGAAGATGAGGAAGAAGTGTGGCTATTCTGGAGAGACAGTAACAAGGAAATCCGCAGTAAGAGTATCAGAGAGTTGGCTCAGGATGCTAAGGAAGGGCAGAAGGAAGATCGGGACGTACTCAGCTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(27.7=100)
A:
PF0136516=RYDR_ITPR=FE(19.4=100)
C2:
PF0136516=RYDR_ITPR=PD(3.9=12.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATCGCAAGCTCCTGGAG
R:
TGCCCTTCCTTAGCATCCTGA
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]