MmuEX6005987 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108515758-108542064:+
Coord C1 exon
chr6:108515758-108515953
Coord A exon
chr6:108517526-108517618
Coord C2 exon
chr6:108541903-108542064
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACTCCCTTCTCTATCCCAGAAA
3' ss Score
6.9
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTTTTGATTTAGTGTACAGAGAGGAGACTTTGCTTAATGTCATTAAAAGTGTCACCCGCAATGGACGGTCCATCATCTTGACAGCGGTCCTGGCTCTGATCCTGGTTTACCTGTTCTCAATTGTGGGCTATCTGTTCTTCAAGGATGACTTTATCTTGGAAGTAGATAGGTTGCCCAATGAAACAGCTGTTCCAG
Seq A exon
AAACTGGCGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCAGGGTAGAGACGGGGGAGAACTGCACCTCTCCTGCACCCAAAGAAG
Seq C2 exon
GAAAGAAACCTTGATTGGTTCCCCAGAATGAGAGCCATGTCCCTGGTCAGCAGCGATTCTGAAGGGGAACAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCTACCATGAAGCTGGTCACCAATCTTTCTGGCCAGCTGTCAGAACTAAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-56/59=55-C2
Average complexity
C2*
Mappability confidence:
98%=98=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.359
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(25.3=100)
A:
PF0052026=Ion_trans=FE(12.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuEX0024724
- MmuEX0024725
- MmuEX0024727
- MmuEX0024728
- MmuEX0024730
- MmuEX0024731
- MmuEX6005985
- MmuEX6005986
- MmuEX6005988
- MmuEX6005989
- MmuEX6005990
- MmuEX6005992
- MmuEX6005993
- MmuEX6005994
- MmuEX6005995
- MmuEX6005998
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
- MmuINT0084468
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATCATCTTGACAGCGG
R:
ACATGGCTCTCATTCTGGGGA
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types