Special

BtaEX6093970 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21648884-21651949:-
Coord C1 exon
chr22:21651754-21651949
Coord A exon
chr22:21650123-21650215
Coord C2 exon
chr22:21648884-21649023
Length
93 bp
Sequences
Splice sites
3' ss Seq
AATTGCCTTCTCTCTCCCAGAAG
3' ss Score
8.76
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTTTTGATTTAGTGTACAGAGAAGAGACTCTGCTCAATGTCATTAAAAGCGTCACTCGCAACGGCCGGTCCATCATCTTGACGGCGGTTCTGGCTTTGATCCTGGTTTACCTGTTCTCCATAGTGGGCTACCTTTTCTTCAAAGATGACTTCATCTTGGAAGTAGATAGGCTGCCCAATGAAACCTCTCTTCCAG
Seq A exon
AAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTGACGTGTGTAGGGTGGAGACTGGGGAGAACTGCTCCTCTCCGGCACCCAAAGAAG
Seq C2 exon
AGCTGGTCCCTGCAGAAGAGACAGAGCAAGATAAAGAGCACACGTGCGAGACGCTGCTGATGTGCATCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGGGCGGAGTGGGCGATGTGCTCAGGAAGCCATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'68-69,'68-67,69-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.156 C2=0.170
Domain overlap (PFAM):

C1:
PF0052026=Ion_trans=FE(25.3=100)
A:
PF0052026=Ion_trans=FE(12.1=100)
C2:
PF0052026=Ion_trans=FE(17.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCTCCATAGTGGGCT
R:
GACTCAGCACCGTGACGATG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]