RnoEX0045406 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140546406-140549519:+
Coord C1 exon
chr4:140546406-140546601
Coord A exon
chr4:140548152-140548244
Coord C2 exon
chr4:140549380-140549519
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACTCCATTCTCTCTCCCAGAAA
3' ss Score
7.72
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTTTTGATTTAGTGTACAGAGAGGAGACTTTGCTTAATGTCATTAAAAGTGTCACCCGCAATGGACGGTCCATCATCTTGACAGCGGTCCTGGCTCTGATTCTGGTTTACCTGTTCTCAATTGTGGGCTACCTGTTCTTCAAGGATGACTTTATCTTGGAAGTAGACAGGTTGCCCAATGAGACAGCTGGTCCAG
Seq A exon
AAACTGGTGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCCGGGTAGAGACGGGGGAGAACTGCACCTCTCCGGCACCCAAAGAAG
Seq C2 exon
AGCTGCTCCCTGTGGAAGAAACGGAACAGGATAAGGAGCACACGTGTGAGACACTGCTCATGTGCATCGTCACCGTTCTGAGTCACGGGCTGCGGAGTGGGGGCGGAGTAGGAGATGTGCTCAGGAAGCCATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'91-97,'91-94,93-97
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.125 C2=0.170
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(25.3=100)
A:
PF0052026=Ion_trans=FE(12.1=100)
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGTCACCCGCAATGGA
R:
CGTTTCTTCCACAGGGAGCAG
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]