MmuEX6005987 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108465752-108468823:+
Coord C1 exon
chr6:108465752-108465947
Coord A exon
chr6:108467520-108467612
Coord C2 exon
chr6:108468684-108468823
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACTCCCTTCTCTATCCCAGAAA
3' ss Score
6.9
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTTTTGATTTAGTGTACAGAGAGGAGACTTTGCTTAATGTCATTAAAAGTGTCACCCGCAATGGACGGTCCATCATCTTGACAGCGGTCCTGGCTCTGATCCTGGTTTACCTGTTCTCAATTGTGGGCTATCTGTTCTTCAAGGATGACTTTATCTTGGAAGTAGATAGGTTGCCCAATGAAACAGCTGTTCCAG
Seq A exon
AAACTGGCGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCAGGGTAGAGACGGGGGAGAACTGCACCTCTCCTGCACCCAAAGAAG
Seq C2 exon
AGCTGCTCCCTGCCGAAGAAACGGAACAGGATAAGGAACACACGTGTGAGACCCTGCTCATGTGCATCGTCACTGTTCTGAGTCACGGGCTGCGGAGTGGGGGAGGGGTAGGAGACGTGCTCAGGAAGCCATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'69-69,'69-68,70-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.170
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(25.3=100)
A:
PF0052026=Ion_trans=FE(12.1=100)
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATCTTGACAGCGGTCC
R:
CAGGGTCTCACACGTGTGTTC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: