MmuINT0084468 @ mm10
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108517526-108518829:+
Coord C1 exon
chr6:108517526-108517618
Coord A exon
chr6:108517619-108518689
Coord C2 exon
chr6:108518690-108518829
Length
1071 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTTACTTGCCCTGCTCACAGAGC
3' ss Score
7.15
Exon sequences
Seq C1 exon
AAACTGGCGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCAGGGTAGAGACGGGGGAGAACTGCACCTCTCCTGCACCCAAAGAAG
Seq A exon
GTAGGACCACATGGCCACCAGCCCCAGGTGACTATCAGCACCTTCAGTGAAGTACGTGAGGCAGGTGGTATTGGAAGCAGATTAAAGAAAGCGGAACTACTGCTTAGGAGCGAGGCTAACAACAAAAGGGAGAAGTTAGTTGGGGTTGCAGGGGATGAACAGAAAGGAAGCCACGTATGATGAAGCAAGCTACTGACTTGAGGCAGCCAATATTTGAGTGCCCTCTGTGGACAGGGAGACAGCCTGGGAGGGGAGGGTGGTGGAGTAAACGAGAGTTCACATAACCAAATGCTGCTTCAGTAAGGGTGCCATTCAGAAGACAGGCAGCCAGCAGAGTATTGCGGTAAAGGTGCTGCAATGCAACCCAAGGACTCTCAGGCTAAGGAGGGGAGGAAGGCATTCATTGGTAAAAGTCCTTCAGAGAGAGAACAGGCATGTGCAAGGAGAGCAGCAAGAGATGGTTCCAGAAAAGGACCGGTCTCTATGGATCTGTGTCAGGCTAAGCAGGTGAAAGTTACAGAGCCCCAGAAGCTGCTGGACTGCACCTCAGTGGGAGAGCACTTGCTTAGTCTGTGTGAGGTCCTGCCAGGAGTACAAAATAAATAGATAAGAGAGATCTTTAGCAACCCAGTGAGAAGGTAGCAAGACAGGCTGCAAAGTGGGATAAACAGCCTCTAATGGGAAGCCAAAGACCTGTTTCTGTCCTCTGAGCATGCCCAGTTGGGTACTTGGCAGAAACCTCACCTGAGAAGCAAGATGCCTTGTTCCCAGCCTAGGCCAAAGACTATTCTGTTTGTAGGTAGGACTATACTGTAACATGGTCAAACAATAGGAGATATCTGAAGCTCCATAGAGGAAGGACAGTACTGGCTTAGCTTGAGAAGTTTGCAGGGTTTAAAGTGGGAACAGCCCTGTTTGACTCCTGACAGCACATATCTGACTCGTAACGGCTTAATTTTATTCCCTGGGCTGCCAGCTGGAGAGATGGCATTTGGGAAGCATCACAGGGGAATCGCAGTGTCTCTTTCCCCCCTCCTGTCTTAACTGTGTTGTTACTTGCCCTGCTCACAG
Seq C2 exon
AGCTGCTCCCTGCCGAAGAAACGGAACAGGATAAGGAACACACGTGTGAGACCCTGCTCATGTGCATCGTCACTGTTCTGAGTCACGGGCTGCGGAGTGGGGGAGGGGTAGGAGACGTGCTCAGGAAGCCATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102:ENSMUST00000032192:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.1=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
- MmuEX0024724
- MmuEX0024725
- MmuEX0024727
- MmuEX0024728
- MmuEX0024731
- MmuEX6005986
- MmuEX6005987
- MmuEX6005988
- MmuEX6005989
- MmuEX6005990
- MmuEX6005992
- MmuEX6005993
- MmuEX6005994
- MmuEX6005995
- MmuEX6005998
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGCGAGAGTTTGGCC
R:
CTCTTTGGATGGCTTCCTGAG
Band lengths:
233-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types