DreINT0083672 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35547785-35550142:-
Coord C1 exon
chr11:35550056-35550142
Coord A exon
chr11:35547931-35550055
Coord C2 exon
chr11:35547785-35547930
Length
2125 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCA
5' ss Score
5.45
3' ss Seq
GCTGTGTTGTTTTTCCTCAGCTG
3' ss Score
8.51
Exon sequences
Seq C1 exon
AGCAATCAGCCAGTAAGATGGGAGAGTTCCTGGCTGGAGCAGTGTGTAGAAAAGAAGAGAACTGTTCCACTGAGACCATGATGGACG
Seq A exon
GTACCAAACACAGCATCCCTAAACACACTCTTATGCACACTCATGCATGCACACACACTCCCACACATGCACACACACACACACCCCTCGAAAGCAGACACACTCACACCCTTACACACACACACACCTATACACACAGGTAAACACACATGCACACACAGGCTCACACTCTTACACTCACACCCATACACACAGACACACAAGCATACACACCCATACACACTCACACCCTTGCACACGCTCTTGCAATTAAATCTGAGCGGTAGTGCTGGTCATGAGATGTGTAAAGGAGAGACTCTGTGGGTTATTTGGGTGATGTTTGGGGTCAGAGGTTAATGACAGTCAGGCTCTAAATGTTCAGGAGGTTCTTGCTGGTTTTGGGGTCAGAGGTCAGAGCACTTTAATTGGGATTTGTGAGCTGTTCTTTGAGAATGTGCAAATTTAAGATGTAAGAGCACCTAATTTGATCAGTGGAGCTGATCGGCTGACCTGAACCCGCTGAACCGGCTCTGCATGTGTCGCACGAACTTTAGCACATCAACAGACATTCTGAAAACTGCCCATCACACACTTACTACCACATTGCTAACTGCGTATTTAAAATGAGCTGAAAAAACATCAAGTCAACTTATTGATTTGCATCGGGACAACATGAAGTGATTGTGTGGAACCTATTGTTTTTATAGTGTATGGTTACTTTGGGGTCTTTTTTAAAAGATTGACTACTATGGAAAGTTTTGAGACAGGATCTTTCAAATGTTTTTTTTAACACTTGCACATTGAGGCTATAATTATAAAGTATGTAAATAATAGAAACAAATGAATTAATTAACAATGATTGTTATAAGTTCATTAGTCAAAGTGAAATGCTCTATAAAAGAATAGAACGAACGAATAAATAAATGAATGAATGAATGAATGAATGAATGAATGAATAAATGAGAAAAAAGAATGAATGAATGACTGACTGAGTGATTTAATGAATGAATAAATAAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAAAAAAGAATGACTGCCTGACTGACTGAGTGAATGAATAAACGAAAGACAGAATGAATACATGAGAATAAATGAATGACAAGAATGAATGAATAAATGTTAGAAAAAAAAAAGAAAGAATAAATCCATGAAAAAGAATGATTGAATGCCTGAGAAAGTGTGTAAGAATGAAAGAAAAAAAGAATGAATGCAAGAGAAAGAAAAAAAATGAATGAATGAATGAATTAATGAGAAAGAAAGAATGAATGAATGAATGAATGAATGAATGAATGAGAAATAACGAAAGACGAAATGAATGCATGAGAATAAATCAATGAATGAATAAATGACTAATAAAAAAAGAAGAAAAGAATGAATGCATGAAAAGGAAAATAAATGAATGCATGAAAATGAAAGACAGAATAAATACATGAGAATGAAAGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAAATAAAGATTGAATTAATGAATAAGTGAATGAATGGATGAATGAATGAGAGAGAAAGAAAGAAAGAAAGTTAATGAATGAGAAAGATTAAATGAGAGAATGAATGAATGAATGATTGAATGAATGAATGAATGAATGAATGAATGAATGAAAAAAAATAATGAGAGAATAAATGAATGATAAAGAAATGATTTTAATAATCATTTTAGTTTTAGTTTATTCACTTCACCTTTAGAGCATGAATTTGAACTGTGGAGTAAACCAGAGCACCCAGAGGAAACCCACGCCAACATTTTAATTTGTTTGTAAAAAAAAAAATGTAGTTATTTTATTAACAAGAATACAATTTAATCTGCAAAATGACCTTTGTAATCACACGACTAGCACCAGAAAAATATTCAAATATATAAAAATAGTTCTGTACTTGTTGATGAATGATTCCACTCTTTGTGAACGGGACGTTGTGTAATGTGTGTTTTGATCTGTTGTCTTCTGATCCTATTTTAGGCAAGCATTTACCCACAAACTCTATTTGTGCTGTGAGATTTGCATATACAGATACAGAGCTCTTTGTTAGCTGTGTTGTTTTTCCTCAG
Seq C2 exon
CTGTAGGAGTTCAGTCGTCTGCATTGGTGATTGAGGATAAAGAGAGGACCTGCGACTCTCTGCTTATGTGTATCGTCACTGTGTTGAGCCACGGCCTGCGAAGCGGTGGAGGAGTCGGAGATGTGCTGCGAAAACCCTCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(11.5=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]