BtaINT0078489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21648884-21650215:-
Coord C1 exon
chr22:21650123-21650215
Coord A exon
chr22:21649024-21650122
Coord C2 exon
chr22:21648884-21649023
Length
1099 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTGACTTGCCATGTTCGCAGAGC
3' ss Score
7.79
Exon sequences
Seq C1 exon
AAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTGACGTGTGTAGGGTGGAGACTGGGGAGAACTGCTCCTCTCCGGCACCCAAAGAAG
Seq A exon
GTAGGACCTCGCAGCCTTAAGCCCCACGTTAGTGCCAGGCTCCCCACAAGGCTTAGGTGCACGTGACATTGGAAGCAGATGAAAGCAGACTCACTGCTCAGACGGCCAGGAGCAAGGAGGAGAGGCAGGGAGAGAGGAGGGGAATGAAGGGGGGAGTCTATATGGGAATAAAATGGCGGCTTAATTGTTCCAGTATTTACCGAGTGCCCACTGTGTGCCTGGGGCTATGTTGTATTCTATTGTTGTTGTTTACTCTGTAAGGCGTGTCTGACTCTGCCTTGGAGGTAGAATACAGCATGACTAGGGAAATGATCATGAGGAGGAAGAGTCGGAAGAAACGAAGCCAGAGAGGTCAACAAAGGACCAGATTTTGAAGGGTCTGCAGGTCAGGTTAAAGCTTACTCAAAGGTTGATCCAAGTTGTTGAGAGGGGAGTGATATGACTTGACTGGTGTTTTAGCAAGACCTTTCTGGCTGCAGCTGGAGAAAGAACAAGGCAGTCAAAAAATTTTACCCCCTGAAGACTAGTCTCCAATTTAAGGTGTAAAACGATTTGTCCACAGAACCAATTGTAAAAGGTTGCTGCTGTTGTTATTGTTATGTAGTTGCTAAGAATCTTCTGTGAGACTCTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGACTTCCCAGGCTTGAATACTGGAATGGTTTCCCATTTCCTCCTCCAGTGGATCTTACCAACCCAAGGATAGAACCCATGTCTCCTGCATTGGCAGGCAGATTCTTCACCACTGAATCACTAGTGAAACTCATAAACAGCTATCTAAGTTGAAATGTCTGTTCAGCGCTGAGACTGGAGTTGAAAGTCTGAAAAGTTTACAGTATTTTAGATTTAATGGAGGTAAGGGCAGTTCTGGGCTTGAGAAATGAACAGGGTTTAGTGAACACAGTGGTGACAAAGAAAGCCTTTGACGCTTGATTCCTTTATTTTATTCTCCGGCTCCTGTCTGTCCGCTGGTGAGATGGCATTCAGGAAGCTTGATCTGCAAATCCTGGTCTGTCTTGCCGCTCACGTTCTAAATTCCCCCTGACTTGCCATGTTCGCAG
Seq C2 exon
AGCTGGTCCCTGCAGAAGAGACAGAGCAAGATAAAGAGCACACGTGCGAGACGCTGCTGATGTGCATCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGGGCGGAGTGGGCGATGTGCTCAGGAAGCCATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.1=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGAGAGTTTGGCAAGTG
R:
CTCTTTGGATGGCTTCCTGAG
Band lengths:
230-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]