Special

MmuALTA0009413-2/2 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108417889-108432696:+
Coord C1 exon
chr6:108417889-108418000
Coord A exon
chr6:108432646-108432648
Coord C2 exon
chr6:108432649-108432696
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
TGGAATTTCTGCATGCTTAGCAG
3' ss Score
0.73
Exon sequences
Seq C1 exon
GCTAATAAAACATACCAAGCAACTGCTGGAGGAGAATGAAGAGAAACTATGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGACAGAGGCTATGGAGAGAAG
Seq A exon
CAG
Seq C2 exon
GAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-86-78,86-77-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.187 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000145339





     
                   









    
Main Skipping Isoform:
ENSMUSP00000144880





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000032192
          









    
Other Skipping Isoforms:
ENSMUSP00000145177
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr3:4727123-4727173 
ALTERNATIVE
HsaALTA0004413-2/2
(ITPR1)
Human
(hg19)
chr3:4768807-4768857 
ALTERNATIVE
HsaALTA0004413-2/2
(ITPR1)
Rat
(rn6)
chr4:140464541-140464591 
ALTERNATIVE
RnoALTA0019898-2/2
(Itpr1)
Cow
(bosTau6)
chr22:21731927-21731977 
ALTERNATIVE
BtaALTA0015284-2/2
(ITPR1)
Chicken
(galGal4)
chr12:18476135-18476185 
ALTERNATIVE
GgaALTA0004361-2/3
(ITPR1)
Chicken
(galGal3)
chr12:19120445-19120495 
ALTERNATIVE
GgaALTA0004361-1/2
(Q9DEX2_CHICK)
Zebrafish
(danRer10)
chr11:35622968-35622975 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAGGAGAATGAAGAGAAACTATGCA

				
R: 
GGGTGGACTTGGTTCAAGCTC

				
Band lengths: 
106-109

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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