HsaALTA0004413-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor type 1 [Source:HGNC Symbol;Acc:HGNC:6180]
Coordinates
chr3:4725546-4727173:+
Coord C1 exon
chr3:4725546-4725581
Coord A exon
chr3:4727123-4727125
Coord C2 exon
chr3:4727126-4727173
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGGAATTTCTGCATGCCTAGCAG
3' ss Score
1.23
Exon sequences
Seq C1 exon
CTTCCTCCAGCTCCGGATTCTGAGAACGCCACTGAG
Seq A exon
CAG
Seq C2 exon
GAGCTTGAACCAAGTCCACCCCTGCGGCAGCTGGAAGACCATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-76-72,76-71-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development