RnoALTA0019898-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140463454-140464591:+
Coord C1 exon
chr4:140463454-140463489
Coord A exon
chr4:140464541-140464543
Coord C2 exon
chr4:140464544-140464591
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGGAATTTCTGCACACTTAGCAG
3' ss Score
0.21
Exon sequences
Seq C1 exon
CTGCCACAGCCACCGGAAGCTGAGAACTCCACAGAG
Seq A exon
CAG
Seq C2 exon
GAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-62-62,62-61-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]