RnoEX0045415 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140450442-140470306:+
Coord C1 exon
chr4:140450442-140450553
Coord A exon
chr4:140463454-140463489
Coord C2 exon
chr4:140470174-140470306
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTACTCCCAATTAGCTG
3' ss Score
4.53
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GCTCATAAAACACACCAAGCAGCTGCTAGAGGAGAATGAAGAGAAACTGTGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
CTGCCACAGCCACCGGAAGCTGAGAACTCCACAGAG
Seq C2 exon
GGTGAGGCACTCCGGCAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGTCCACTATCACCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=1.000 C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTAGAGGAGAATGA
R:
GACCAAAATTTGCCGGAGTGC
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]