RnoEX0045397 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140450442-140463489:+
Coord C1 exon
chr4:140450442-140450553
Coord A exon
chr4:140455847-140455879
Coord C2 exon
chr4:140463454-140463489
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTTCTTCTCTTCCAGCAA
3' ss Score
11.87
5' ss Seq
GAGGTCCTA
5' ss Score
-2.92
Exon sequences
Seq C1 exon
GCTCATAAAACACACCAAGCAGCTGCTAGAGGAGAATGAAGAGAAACTGTGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
CAAATTTCCATTGATGAATTGGAAAATGCCGAG
Seq C2 exon
CTGCCACAGCCACCGGAAGCTGAGAACTCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'60-60,'60-59,61-60
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTAGAGGAGAATGA
R:
CTGTGGAGTTCTCAGCTTCCG
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]