GgaEX0027289 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19110179-19123509:+
Coord C1 exon
chr12:19110179-19110208
Coord A exon
chr12:19118814-19118849
Coord C2 exon
chr12:19123377-19123509
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGCATTTTACTTTCAAATAGCTG
3' ss Score
6.69
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CAGATTACCATTGAATTGGATAATGCTGAG
Seq A exon
CTGCCACAACCTCCAGAAGCGGAAAGCTCCGTAGAG
Seq C2 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX1-14/17=13-16
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=1.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTGAATTGGATAATGCTGAG
R:
GTTGCCGAAGCTGGTGAGG
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]