MmuEX0024735 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108367883-108388426:+
Coord C1 exon
chr6:108367883-108367994
Coord A exon
chr6:108381455-108381490
Coord C2 exon
chr6:108388294-108388426
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTTACTCCCAACTAGCTG
3' ss Score
5.18
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GCTAATAAAACATACCAAGCAACTGCTGGAGGAGAATGAAGAGAAACTATGCATTAAAGTCTTACAGACCCTCAGGGAAATGATGACCAAAGACAGAGGCTATGGAGAGAAG
Seq A exon
CTGCCACAGGCACCGGAAGCTGAGAACTCCACAGAG
Seq C2 exon
GGTGAGGCACTCCGACAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGCCCACTATCACCAGGAGGACCCAGCAAGCCTGGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=1.000 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCTGGAGGAGAATGA
R:
AATTTGTCGGAGTGCCTCACC
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: