BtaEX0018598 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21726642-21745719:-
Coord C1 exon
chr22:21745608-21745719
Coord A exon
chr22:21733145-21733180
Coord C2 exon
chr22:21726642-21726774
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTACTCCCAACCAGCTT
3' ss Score
5.8
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTTAATCAAACACACTAAACAGCTGCTGGAGGAGAATGAGGAGAAACTCTGCATCAAGGTCCTTCAGACCCTCAGAGAAATGATGACCAAAGACAGAGGCTATGGAGAAAAG
Seq A exon
CTTCCCCAAGCTCCGGATTCTGAGAACTCCACCGAG
Seq C2 exon
GGTGAGGCCCTCAGGCAGATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCGGGAAGAAGAGAGAGCCTCACGAGCTTTGGCAATGGCCCGCTGTCGCCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455_MULTIEX1-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000054653fB3515
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGCTGGAGGAGAATGA
R:
ACGGTTGACCAAAATCTGCCT
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development