MmuALTA0009413-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108381455-108382690:+
Coord C1 exon
chr6:108381455-108381490
Coord A exon
chr6:108382640-108382642
Coord C2 exon
chr6:108382643-108382690
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGGAATTTCTGCATGCTTAGCAG
3' ss Score
0.73
Exon sequences
Seq C1 exon
CTGCCACAGGCACCGGAAGCTGAGAACTCCACAGAG
Seq A exon
CAG
Seq C2 exon
GAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-48-48,48-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: