GgaALTA0004361-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19118814-19120495:+
Coord C1 exon
chr12:19118814-19118849
Coord A exon
NA
Coord C2 exon
chr12:19120445-19120495
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
AATTTCTACATGCACAGCAGCAG
3' ss Score
-1.01
Exon sequences
Seq C1 exon
CTGCCACAACCTCCAGAAGCGGAAAGCTCCGTAGAG
Seq A exon
NA
Seq C2 exon
CAGGAGCTTGATCAAAGTCTACCACAGAGGCAACTGGAGGATCATAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-47-48,47-47-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACAACCTCCAGAAGC
R:
CCTTCTATGATCCTCCAGTTGCC
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]