BtaALTA0015284-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21731927-21733245:-
Coord C1 exon
chr22:21733145-21733245
Coord A exon
chr22:21731975-21731977
Coord C2 exon
chr22:21731927-21731974
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGGAATTTCTGCCTGCTTAGCAG
3' ss Score
2.46
Exon sequences
Seq C1 exon
GGACTTCTTTGTGGTCACCAGATGCATGTGCTGTAACTAACCTGCTTCCTTTTACTCCCAACCAGCTTCCCCAAGCTCCGGATTCTGAGAACTCCACCGAG
Seq A exon
CAG
Seq C2 exon
GAGCTCGAACCGAGTCCACCGCTGAGGCAGCTGGAGGATCATAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-47-44,47-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTCCCAACCAGCTTCCCC
R:
TATGATCCTCCAGCTGCCTCA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development