GgaALTA0004361-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18474439-18476185:+
Coord C1 exon
chr12:18474439-18474539
Coord A exon
chr12:18476135-18476137
Coord C2 exon
chr12:18476138-18476185
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
AATTTCTACATGCACAGCAGCAG
3' ss Score
-1.01
Exon sequences
Seq C1 exon
GATTTCTGTAGAGATGAAAGACTCCTGAAGAATGACTAATTTCTCTGCATTTTACTTTCAAATAGCTGCCACAACCTCCAGAAGCGGAAAGCTCCGTAGAG
Seq A exon
CAG
Seq C2 exon
GAGCTTGATCAAAGTCTACCACAGAGGCAACTGGAGGATCATAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-55-60,55-59,55-58-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATAGCTGCCACAACCTCC
R:
CCTTCTATGATCCTCCAGTTGCC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]