MmuEX6005991 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108493701-108506052:+
Coord C1 exon
chr6:108493701-108493893
Coord A exon
chr6:108499108-108499230
Coord C2 exon
chr6:108505877-108506052
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCTTCATCTGTTTCCACAGCCC
3' ss Score
8.46
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTCAGACTGGACCGGACAATGGAACAGATCGTCTTCCCTGTGCCCAGCATCTGTGAATTCCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGCGGGATGAGCAAGGTAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAACGAGATGAACTGGCAGAAGAAACTTCGAG
Seq A exon
CCCAGCCTGTCTTGTACTGGTGTGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTATCCATTTAAAGGAGTAAGGGGAG
Seq C2 exon
GAACACTAGAGCCACACTGGTCAGGCCTTCTGTGGACAGCCATGCTCATCTCTCTGGCCATTGTCATTGCTCTGCCCAAGCCCCACGGCATCCGGGCCTTAATTGCTTCTACAATCCTACGACTGATATTTTCAGTTGGGTTGCAGCCCACACTGTTTCTGCTGGGAGCTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_MULTIEX1-52/59=51-53
Average complexity
S*
Mappability confidence:
98%=98=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.9=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuEX0024724
- MmuEX0024725
- MmuEX0024727
- MmuEX0024728
- MmuEX0024731
- MmuEX6005990
- MmuEX6005992
- MmuEX6005993
- MmuEX6005994
- MmuEX6005995
- MmuEX6005998
- MmuEX6006001
- MmuEX6006002
- MmuEX6006003
- MmuEX6006007
- MmuEX6006008
- MmuEX6006009
- MmuEX6006012
- MmuEX6006013
- MmuEX6006014
- MmuEX6006015
- MmuEX6006016
- MmuEX6006017
- MmuEX6006018
- MmuEX6006019
- MmuEX6006021
- MmuEX6006022
- MmuEX6006023
- MmuEX6006025
- MmuEX6006026
- MmuEX6006027
- MmuEX6006028
- MmuEX6006029
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGACTGGACCGGACAAT
R:
GAGATGAGCATGGCTGTCCAC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types